Produce volcano plot data for a single contrast

Produce volcano plot data for a single contrast

Usage

VolcanoData(
  resultTable,
  contrastGroups,
  contrastTitle,
  alphaLevel = 0.05,
  cap = 10
)

Arguments

resultTable

The topTable results from pAdjustData()

contrastGroups

Two contrast group names

contrastTitle

Optional title for the Volcano plot

alphaLevel

Significance cutoff level

cap

Absolute log fold-change cap to cap the logFC x axis so that -cap < logFC < cap.

Value

data.table ready for plotting with VolcanoPlotter()