Plot volcano for a single contrast

Plot volcano for a single contrast

Usage

PlotVolcano(
  resultTable,
  contrastGroups,
  contrastTitle = NULL,
  alphaLevel = 0.05,
  cap = 10,
  ...
)

Arguments

resultTable

The topTable results from pAdjustData()

contrastGroups

Two contrast group names

contrastTitle

Optional title for the Volcano plot

alphaLevel

Significance cutoff level

cap

Absolute log fold-change cap to cap the logFC x axis so that -cap < logFC < cap.

...

Geom aesthetics passed to VolcanoPlotter().

Value

Volcano ggplot