Compare genes in clusterProfiler gseaResult to genes in a bbcRNA object

Output dataframe for genes that did not have an Entrez match (based on rules in ens2entrez) and genes that are present in the bbcRNA object but not in the bbcRNA object. Extracts LFC and PValue from DE results. If present in the bbcRNA object but not in the DE analysis, then it is inferred to be a lowly expressed gene. Includes all rowData.

find_missing_in_gseaResult(gseaResults, bbcRNA, de_pkg = "edger")

Arguments

gseaResults	A list of ClusterProfiler::gseaResult objects outputted by 'run_gsea'.
bbcRNA	bbcRNA object
de_pkg	"edger" or "deseq2"

Value

A dataframe of missing genes.